PyRank

Imaging Python Packages

Python packages with the GitHub topic imaging. Sorted by relevance, with stars and monthly downloads.
spatial-image
multiscale-spatial-image

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

85K 56 9
InsightSoftwareConsortium
itkwasm

High performance spatial analysis in a web browser and across programming languages and hardware architectures

48K 232 60
InsightSoftwareConsortium
itkwasm-downsample-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

40K 232 60
InsightSoftwareConsortium
itkwasm-downsample

High performance spatial analysis in a web browser and across programming languages and hardware architectures

39K 232 60
thewtex
ngff-zarr

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

36K 71 22
InsightSoftwareConsortium
itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

16K 623 83
InsightSoftwareConsortium
itkwasm-image-io

High performance spatial analysis in a web browser and across programming languages and hardware architectures

12K 232 60
InsightSoftwareConsortium
itkwasm-image-io-wasi

High performance spatial analysis in a web browser and across programming languages and hardware architectures

12K 232 60
ornlneutronimaging
nereids

NEREIDS (NEutron REsonance Imaging Diagnostic Suite) is a research-grade toolkit for neutron resonance imaging, providing a Rust physics core, Python bindings, and NeXus/HDF5-compliant data I/O, with a path to fast, standalone GUI workflows for VENUS/MARS.

10K 1 0
PyAbel
pyabel

A python package for Abel and inverse Abel transforms

9K 103 45
odlgroup
odl

Operator Discretization Library https://odl.readthedocs.io/

9K 434 120
sim-reconstruction
simtk

Place to build a Python version of the SIM reconstruction code.

6K 6 0
JaneliaSciComp
fileglancer

Browse, share, and publish OME-Zarr data

6K 27 5
MouseLand
suite2p

cell detection in calcium imaging recordings

6K 458 276
brainglobe
cellfinder

Automated 3D cell detection in very large images

5K 229 77
yurivelichko
glam-radiomics

Gray Level Affinity Metrics (GLAM)

5K 3 0
afermg
cp-measure

Morphological features from images and masks made easy.

4K 48 11
InsightSoftwareConsortium
itk-webassemblyinterface

High performance spatial analysis in a web browser and across programming languages and hardware architectures

2K 232 60
InsightSoftwareConsortium
itkwasm-downsample-emscripten

High performance spatial analysis in a web browser and across programming languages and hardware architectures

2K 232 60
spacetx
starfish

starfish: unified pipelines for image-based transcriptomics

2K 249 71
pycroscopy
atomai

Deep and Machine Learning for Microscopy

2K 228 42
InsightSoftwareConsortium
itk-ioscanco

ITK Image IO for Scanco MicroCT .ISQ files

2K 13 15
Donders-Institute
bidscoin

BIDScoin converts your source-level neuroimaging data to BIDS

2K 159 37
MatthewFilipovich
torchoptics

Differentiable wave optics simulation library built on PyTorch

2K 139 19