Imagej Python Packages

tifffile

Read and write TIFF files.

roifile

Read and write ImageJ ROI format.

flika

An interactive image processing program for biologists written in Python.

napari-imagej

Use ImageJ functionality from napari

imagepy

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

rawimage

Read and write RAW images (or data arrays) without a headache.

napari-aphid

A plugin to classify aphids by stage of development.

opencv-rolling-ball

Now function returns both result image and subtracted background

napari-j

A plugin to exchange data with FIJI and to use FIJI image analysis from napari

maskflow

Maskflow: Object Detection and Segmentation for Cell Biology.

napari-tifffile

A napari plugin for reading files via tifffile