Imagej Python Packages

tifffile

Read and write TIFF files.

roifile

Read and write ImageJ ROI format.

pyflash-analysis

ImageJ confocal microscopy data processing and analysis pipeline

flika

An interactive image processing program for biologists written in Python.

napari-imagej

Use ImageJ functionality from napari

imagepy

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

rawimage

Read and write RAW images (or data arrays) without a headache.

napari-aphid

This directory contains all the elements and structure of the napari-aphid plugin

opencv-rolling-ball

Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.

napari-j

Connect Napari with FIJI/ImageJ

maskflow

Object Detection and Segmentation for Cell Biology.

napari-tifffile

Read and write TIFF files.