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Illumina Python Packages

Python packages with the GitHub topic illumina. Sorted by relevance, with stars and monthly downloads.
rhpvorderman
sequali

Sequali is a QC tool that generates useful graphs for both short and long-read data.

5K 33 1
SemaphoreSolutions
s4-clarity

A modern Python library for BaseSpace Clarity LIMS.

4K 16 12
clintval
sample-sheet

Parse Illumina sample sheets with Python

3K 50 16
inumanag
aldy

A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymorphic and structurally variant genes

1K 70 23
brj0
mepylome

Python package for processing Infinum DNA methylation arrays

1K 10 1
RIVM-bioinformatics
ampligone

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

964 20 1
eliopato
pylluminator

Python package for processing and analyzing Illumina DNA methylation data

704 11 1
ASSNAKE
assnake

Snakemake based framework for NGS data analysis and management

267 12 4
pablo-aja-macaya
arvia

ARVIA (Antibiotic Resistance Variant Identifier for Pseudomonas aeruginosa) takes single-end/paired-end reads and/or assemblies to perform exhaustive variant calling of genes related to antibiotic resistance in Pseudomonas aeruginosa.

189 1 0
scbirlab
monte-barcode

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

155 0 0
baneslab
iscanvcfmerge

Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.

108 0 0
eliopato
pylluminator-modern

Tool to preprocess, analyze and visualize DNA methylation data from Illumina micro-arrays

71 11 1
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