Illumina Python Packages

sequali

Fast sequencing data quality metrics

4K 38 2

s4-clarity

A modern Python library for BaseSpace Clarity LIMS.

3K 15 12

sample-sheet

Parse Illumina sample sheets with Python

2K 51 16

checkqc

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

2K 30 17

mepylome

Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files

1K 12 1

aldy

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

1K 76 24

ampligone

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

738 20 1

pylluminator

Python package for processing and analyzing Illumina DNA methylation data

299 12 1

monte-barcode

🔴🟢🔵⚫️ Generating sets of random DNA sequences optimized for use in high-throughput sequencing.

144 0 0

assnake

Snakemake based framework for NGS data analysis and management

127 12 4

arvia

ARVIA: Antibiotic Resistance Variant Identifier for Pseudomonas aeruginosa

112 1 0

check-my-sample-sheet

Check My Sample Sheet web application

102 3 1

iscanvcfmerge

Python tool to merge cross-species Illumina iScan genotype data with a reference set of genotypes from a pre-existing source.

70 0 0

pylluminator-modern

Python package for processing and analyzing Illumina DNA methylation data

60 12 1