PyRank

Human Cell Atlas Python Packages

Python packages with the GitHub topic human-cell-atlas. Sorted by relevance, with stars and monthly downloads.
scverse
scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

86K 2K 466
theislab
scarches

Reference mapping for single-cell genomics

2K 406 70
spacetx
starfish

starfish: unified pipelines for image-based transcriptomics

2K 249 71
YosefLab
scvi

Deep probabilistic analysis of single-cell and spatial omics data

2K 2K 466
lasersonlab
zappy

Distributed processing with NumPy and Zarr

860 9 2
broadinstitute
single-cell-portal

Tutorials, workflows, and convenience scripts for Single Cell Portal

215 51 25
Teichlab
genes2genes

Aligning gene expression trajectories of single-cell reference and query systems

191 89 13