PyRank

Human Cell Atlas Python Packages

Python packages with the GitHub topic human-cell-atlas. Sorted by relevance, with stars and monthly downloads.
scverse
scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

94K 2K 450
theislab
scarches

Reference mapping for single-cell genomics

3K 404 70
YosefLab
scvi

Deep probabilistic analysis of single-cell and spatial omics data

2K 2K 450
spacetx
starfish

starfish: unified pipelines for image-based transcriptomics

2K 248 71
lasersonlab
zappy

Distributed processing with NumPy and Zarr

736 9 2
Teichlab
genes2genes

A tool for aligning gene expression trajectories of single-cell reference and query systems

206 88 13
broadinstitute
single-cell-portal

Convenience scripts for Single Cell Portal

190 51 25