PyRank

Hmmer Python Packages

Python packages with the GitHub topic hmmer. Sorted by monthly downloads, with stars and forks.
althonos
pyhmmer

Cython bindings and Python interface to HMMER3.

121K 172 20
vagkaratzas
mgnifam

Build protein families from sequence clusters by iterative HMM search over very large databases — streaming, deterministic, pyHMMER-based.

1K 11 0
K-nie
genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

139 1 0
robaina
pynteny

Query sequence database by HMMs arranged in predefined synteny structure

111 21 2
joshuaowalker
pyitsx

Fast ITS region detection and extraction for Python, powered by in-process HMM search via pyhmmer

82 0 0
althonos
pyhmmer-arm

Cython bindings and Python interface to HMMER3.

55 172 20