Hmmer Python Packages

pyhmmer

Cython bindings and Python interface to HMMER3.

pynteny

Query sequence database by HMMs arranged in predefined synteny structure

pyitsx

Fast ITS region detection and extraction using in-process HMM search

genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

pyhmmer-arm

Cython bindings and Python interface to HMMER3.