Hiv Python Packages

dna-decode

Deterministic, interpretable genome→phenotype decoder: calls antibiotic/antiviral/antifungal resistance from DNA + names the exact genes/mutations driving each call. Spans bacteria, M. tuberculosis, fungi, HIV-1 & SARS-CoV-2 — independently validated on FREE measured wet-lab labels (EBI AMR Portal, Stanford HIVDB). Not a clinical tool.

emod-malaria

Source files for building the IDM EMOD disease transmission model.

emod-common

Source files for building the IDM EMOD disease transmission model.

emod-hiv

Source files for building the IDM EMOD disease transmission model.

mapitio-edc

Retrospective HIV Cohort for Diabetes Research - Tanzania

jphmm-tools

Methods for extracting information from jpHMM (http://jphmm.gobics.de) output.