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Highly Variable Genes Python Packages

Python packages with the GitHub topic highly-variable-genes. Sorted by monthly downloads, with stars and forks.
leelieber2025
scfair

 scFair: a seamless Python alternative for scanpy.pp.highly_variable_genes that fixes two silent failures in single-cell HVG selection — no more guessing gene count (auto-sized n_top_genes) and no more losing rare cell-type markers to majority-biased ranking (smart top-k extension).

632 5 0
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