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High Throughput Sequencing Python Packages

Python packages with the GitHub topic high-throughput-sequencing. Sorted by monthly downloads, with stars and forks.
guma44
geoparse

Python library to access Gene Expression Omnibus Database (GEO)

30K 163 52
USDA-VS
vsnpdev

vSNP -- validate SNPs

107 22 12
weng-lab
umitools

A toolset for handling sequencing data with unique molecular identifiers (UMIs)

102 17 4
zavolanlab
multiqc-plugins

Custom plugins for the MultiQC tool.

77 1 0
zavolanlab
htsinfer

Infer metadata for your downstream analysis straight from your RNA-Seq data

50 15 21
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology