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Hierarchical Clustering Python Packages

Python packages with the GitHub topic hierarchical-clustering. Sorted by relevance, with stars and monthly downloads.
skfolio
skfolio

Python library for portfolio optimization built on top of scikit-learn

78K 2K 203
datamade
dedupe-hcluster

Hierarchical Clustering Algorithms

10K 36 20
gagolews
genieclust

Genie: Fast and Robust Hierarchical Clustering

6K 73 12
arclabs561
cohera

Sheaf theory and community detection

2K 0 0
panagiotisanagnostou
hipart

A hierarchical divisive clustering toolbox

2K 52 8
jonnevd
constrained-linkage

Python implementation of a (plug-and-play) constrained linkage function for constrained hierarchical clustering with maximum cluster size, minimum cluster size, must-link, cannot-link and custom constraints, returns SciPy-compatible linkage matrix for subsequent Hierarchical Agglomerative Clustering. Based on HEAT published in Energy and AI (2025)

407 0 0
xiyanghu
bhclustering

Bayesian Hierarchical Clustering

333 4 1
nmonath
graphgrove

A framework for building (and incrementally growing) graph-based data structures used in hierarchical or DAG-structured clustering and nearest neighbor search

296 44 8
Aayushpatel007
topicrankpy

A Python package to get useful information from documents using TopicRank Algorithm.

257 16 3
volfpeter
localclustering

Python 3 implementation and documentation of the Hermina-Janos local graph clustering algorithm.

243 24 1
beginnerSC
pyminimax

Python implementation of minimax-linkage hierarchical clustering

154 1 0
md-experiments
picture-text

Interactive tree-maps with SBERT & Hierarchical Clustering (HAC)

149 30 9
guglielmosanchini
clustviz

Visualization of many Clustering Algorithms, via Notebook or GUI

110 24 14
andgoldschmidt
pyprotoclust

Python Prototype Clustering: an implementation of minimax linkage for hierarchical clustering

108 5 0
shlienlab
raccoon-cluster

Multi-scale clustering in Python

99 5 4
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