Hidivelab Python Packages

tableschema-to-template

Given a Frictionless Table Schema, generate an Excel template with input validation

pluot

Plotting, unified.

vitessce

Python API and Jupyter widget for Vitessce

pluot-bound

Plotting, unified.

esbuild-py

Python bindings to the esbuild Transform API

clodius

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

pluot-core

Plotting, unified.

pluot-widget

Plotting, unified.

udi-grammar-py

Python code for generating udi-grammar specifications.

portal-visualization

Given HuBMAP Dataset JSON, creates a Vitessce configuration

higlass-python

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

cvh-client

A collaborative platform for creating and sharing interactive genomic, spatial, and single-cell visualizations. Powered by Gosling and Vitessce.

gosling

A declarative interactive genomics visualization library for Python.

hubmap-api-py-client

Python client for the Cells API

easy-vitessce

Configure Vitessce using existing Scverse plotting APIs

higlass-manage

A utility script to manage local docker instances of HiGlass

chromoscope

Interactive multiscale visualization for structural variation in human genomes

uchimata

Visualization of 3D genome models in notebooks

higlass

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

miqc-py

Python implementation of miQC: probablistic quality control of scRNA-seq data