Hidden Markov Model Python Packages

pyhmmer

Cython bindings and Python interface to HMMER3.

rustling

A high-performance library for computational linguistics

deeptime

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

awesomepmc

Copula-based pairwise Markov chains for non-Gaussian time-series classification, estimation, imputation and forecasting.

pyemma

🚂 Python API for Emma's Markov Model Algorithms 🚂

lymph-model

Python package for statistical modelling of lymphatic metastatic spread in head & neck cancer.

mchmm

Markov Chains and Hidden Markov Models in Python

chadhmm

Yet another implementation of Hidden (Semi-) Markov Models in PyTorch with several extensions. Feel free to contribute.

insurance-telematics

HMM-based telematics risk scoring for insurance pricing — driving state classification from raw trip data to GLM-compatible features

iohmm

Input Output Hidden Markov Model (IOHMM) in Python

bayesian-hmm

A non-parametric Bayesian approach to Hidden Markov Models

hmmviz

A package for visualizing state transition graphs from hidden Markov models or other models.

marmo

Markov-like processes as one recursion over a belief algebra and a semiring: HMM, HSMM, Kalman, and particle inference behind a decidable engine dispatch.

variationalhmm

Jax Parallel Implementation of Variational Hidden Markov Model

pyhmmer-arm

Cython bindings and Python interface to HMMER3.