Hidden Markov Model Python Packages

pyhmmer

Cython bindings and Python interface to HMMER3.

rustling

A high-performance library for computational linguistics

deeptime

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

pyemma

🚂 Python API for Emma's Markov Model Algorithms 🚂

lymph-model

Python package for statistical modelling of lymphatic metastatic spread in head & neck cancer.

pyadlml

Sklearn flavored library containing numerous Activity of Daily Livings datasets, preprocessing methods, visualizations and models.

mchmm

Markov chains and Hidden Markov models

insurance-telematics

Telematics insurance pricing: HMM driving state classification and GLM risk scoring from raw trip data for usage-based insurance (UBI) and pay-how-you-drive (PHYD) products.

chadhmm

Yet another implementation of Hidden (Semi-) Markov Models in PyTorch with several extensions. Feel free to contribute.

marmo

Markov-like processes as one recursion over a belief algebra and a semiring: HMM, HSMM, Kalman, and particle inference behind a decidable engine dispatch.

hmmviz

A package for visualizing state transition graphs from hidden Markov models or other models.

bayesian-hmm

A non-parametric Bayesian approach to Hidden Markov Models

iohmm

A python library for Input Output Hidden Markov Models

variationalhmm

Jax Parallel Implementation of Variational Hidden Markov Model

pyhmmer-arm

Cython bindings and Python interface to HMMER3.

edhsmm

An(other) implementation of Explicit Duration Hidden Semi-Markov Models in Python 3