Hidden Markov Model Python Packages

pyhmmer

Cython bindings and Python interface to HMMER3.

rustling

A high-performance library for computational linguistics

deeptime

Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation

pyemma

PyEMMA: Emma's Markov Model Algorithms

mchmm

Markov Chains and Hidden Markov Models in Python

lymph-model

Python package for statistical modelling of lymphatic metastatic spread in head & neck cancer.

pyadlml

Sklearn flavored library containing numerous Activity of Daily Livings datasets, preprocessing methods, visualizations and models.

hmmviz

A package for visualizing state transition graphs from hidden Markov models or other models.

bayesian-hmm

A non-parametric Bayesian approach to Hidden Markov Models

insurance-telematics

HMM-based telematics risk scoring for insurance pricing — driving state classification from raw trip data to GLM-compatible features

chadhmm

Package for Hidden Markov and Hidden Semi-Markov Models

iohmm

A python library for Input Output Hidden Markov Models

variationalhmm

Jax Parallel Implementation of Variational Hidden Markov Model

pyhmmer-arm

Cython bindings and Python interface to HMMER3.

edhsmm

An(other) implementation of Explicit Duration Hidden Semi-Markov Models in Python 3