Healthcare Python Packages

fhir-resources

FHIR Resources https://www.hl7.org/fhir/resourcelist.html

icd10-cm

ICD-10 CM medical classification list by the World Health Organization

pysof

The Helios FHIR Server is an implementation of the HL7® FHIR® standard, built in Rust for high performance and optimized for clinical analytics workloads.

messagefoundry

MessageFoundry Healthcare Interface Engine

meds-reader

A high-performance database and Python reader interface for MEDS datasets

stepcount

Improved Step Counting via Foundation Models for Wrist-Worn Accelerometers

pytrials

Python package that wraps around the ClinicalTrials.gov API

pyhealth

A Deep Learning Python Toolkit for Healthcare Applications.

medpython

Medial Research Libs Infrastructure

hl7parser

a simple hl7-parser

actinet

An activity classification model based on self-supervised learning for wrist-worn accelerometer data.

omophub

Python SDK for OMOP/OHDSI vocabularies - query 10M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 90+ terminologies via simple API

omh-shim

Convert wearable health data from vendor schemas to Open mHealth schemas.

hi-ml-azure

Microsoft Health Futures package to elevate and monitor scripts to an AzureML workspace

fhirpath

FHIRPath implementation in Python.

eyegestures

gaze tracking software

bag-epl-mcp

MCP server for Swiss BAG reimbursement lists: Spezialitätenliste (SL), GGSL, MiGeL – Swiss social law navigator in natural language

fuse-med-ml

A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

hi-ml

Microsoft Health Futures package containing high level ML components

trust-free

An interpretable regression model in Python with Random-Forest-level accuracy

healthchain

Python SDK for healthcare AI: connect models to live EHR systems, skip the integration tax 💫 🏥

vitallens

Python package for estimation of vital signs such as heart rate, HRV, and respiratory rate from face video.

flatehr

Tool for generating openEHR compositions from other formats

fhir-pyrate

FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.