PyRank

Health Informatics Python Packages

Python packages with the GitHub topic health-informatics. Sorted by relevance, with stars and monthly downloads.
dermatologist
pyomop

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.

12K 63 11
ambition-trial
ambition-edc

(P.I. Joe Jarvis) High Dose AMBISOME on a Fluconazole Backbone for Cryptococcal Meningitis Induction Therapy in sub-Saharan Africa: A Phase 3 Randomised Controlled Non-Inferiority Trial

11K 5 1
clinicedc
edc-visit-schedule

Define data collection schedules for CRFs and Requisitions.

4K 1 2
clinicedc
edc-visit-tracking

Track study participant visits and ensure documented cover for all data collection on participants

4K 1 4
clinicedc
edc-export

Export Edc models to CSV

3K 0 2
clinicedc
edc-lab

Lab module to Receive, Process, Pack, Verify, Ship

3K 0 1
clinicedc
edc-reportable

Reportable clinic events, reference ranges, grading for clinicedc/edc projects

2K 0 1
clinicedc
edc-pdutils

Use pandas with clinicedc/edc projects

2K 0 1
nlpie
biomedicus

A biomedical and clinical natural language processing engine.

2K 21 8
nlpie
biomedicus-client

BioMedICUS: A biomedical and clinical NLP engine.

846 21 8
Xcept-Health
episia

Python toolkit for epidemiological modelling and reporting. SIR/SEIR/SEIRD compartmental models, sensitivity analysis, interactive visualisations, and automated HTML/Markdown/JSON reports, built for low-resource health contexts.

712 5 0
eddie-cosma
medberg

⚙️ Library for downloading files from the Cencora secure file transfer site

251 1 0
dermatologist
iflow-mcp-dermatologist-pyomop

OMOP CDM utils in Python

114 63 11