Health Informatics Python Packages

pyomop

Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries, MCP server and FHIR import.

17K 64 10

ambition-edc

(P.I. Joe Jarvis) High Dose AMBISOME on a Fluconazole Backbone for Cryptococcal Meningitis Induction Therapy in sub-Saharan Africa: A Phase 3 Randomised Controlled Non-Inferiority Trial

7K 5 1

edc-visit-schedule

Define data collection schedules for CRFs and Requisitions.

4K 1 2

edc-visit-tracking

Track study participant visits and ensure documented cover for all data collection on participants

4K 1 4

edc-lab

Lab module to Receive, Process, Pack, Verify, Ship

3K 0 1

edc-export

Export Edc models to CSV

3K 0 2

edc-pdutils

Use pandas with the Edc

2K 0 1

edc-reportable

Reportable clinic events, reference ranges, grading

2K 0 1

biomedicus

BioMedICUS: A biomedical and clinical NLP engine.

999 21 8

episia

Python toolkit for epidemiological modelling and reporting. SIR/SEIR/SEIRD compartmental models, sensitivity analysis, interactive visualisations, and automated HTML/Markdown/JSON reports, built for low-resource health contexts.

911 6 1

biomedicus-client

BioMedICUS: A biomedical and clinical NLP engine.

525 21 8

medberg

⚙️ Library for downloading files from the Cencora secure file transfer site

251 1 0

iflow-mcp-dermatologist-pyomop

OMOP CDM utils in Python

144 64 10