Health Data Python Packages

garmin-health-data

A simple Python CLI to extract Garmin Connect data and save it to a SQLite database file

reflex-junction

Reflex custom component for Junction (Vital) health data integration — connect wearables and health platforms with Python

vitabel

Python toolbox for plotting, processing, and interactively labeling vital data

samsung-health-sdk

Python SDK for parsing Samsung Health exports — DataFrames, feature engineering, ML-ready datasets & interactive HTML dashboards

aecg

Python parser and viewer for Annotated ECG HL7 files.

datasus-db

Download and import Brazilian DATASUS's public data to a DuckDB database

medicaid-utils

Python toolkit for Medicaid claims data analysis — preprocessing, cleaning, risk adjustment (Elixhauser, CDPS-Rx), quality measures (PQI, BETOS, low-value care), and patient-level analytic file construction for MAX and TAF CMS data. Built on Dask for scalable processing of large-scale healthcare claims datasets.

pydhis2

Reproducible DHIS2 Python SDK for LMIC scenarios

heartbridge

Using the iOS Shortcuts app and Python together to export iOS Health data to a JSON/CSV file.

lemonpie

A deep learning library for Electronic Health Record (EHR) data

nhanes-pytool-api

The NHANES Data 'API' is a Python tool that simplifies access to the National Health and Nutrition Examination Survey (NHANES) dataset. This project provides an easy-to-use API to retrieve NHANES data, helping researchers, data scientists, health professionals, and other stakeholders access these valuable datasets.

chartfold

Patient-facing tool for consolidating personal health data from multiple EHR systems into a single SQLite database