Hdf5 Python Packages

h5netcdf

Pythonic interface to netCDF4 via h5py

numpydantic

Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)

hdmf

The Hierarchical Data Modeling Framework

pynwb

A Python API for working with Neurodata stored in the NWB Format

awkward0

Manipulate arrays of complex data structures as easily as Numpy.

h5grove

h5grove is a Python package that provides utilities to design backends serving HDF5 file content: attributes, metadata and data.

silx

silx toolkit

openpmd-api

:floppy_disk: C++ & Python API for Scientific I/O

visidata

A terminal spreadsheet multitool for discovering and arranging data

scitex-io

Universal scientific data I/O with a plugin format registry

cooler

A cool place to store your Hi-C

scippnexus

h5py-like utility for NeXus files with seamless scipp integration

deepdish

Flexible HDF5 saving/loading and other data science tools from the University of Chicago

legend-pydataobj

LEGEND Python Data Objects

swiftsimio

Python library for reading SWIFT data. Uses unyt and h5py.

legend-lh5io

LEGEND HDF5 I/O in Python

adios2

Next generation of ADIOS developed in the Exascale Computing Program

discretisedfield

Python package for the analysis and visualisation of finite-difference fields.

nxstools

NeXus command-line tools for setting NeXus tango servers and preparing their configurtation

jupyterlab-h5web

A JupyterLab extension to explore and visualize HDF5 file contents. Based on https://github.com/silx-kit/h5web.

h5io-browser

Easy navigation and data storage for HDF5

spec2nexus

Converts SPEC data files and scans into NeXus HDF5 files

pycgns

A Python package for CGNS

aiaccel

AIST Toolkit for Accelerating Machine Learning Research