Hdf5 Python Packages

h5netcdf

Pythonic interface to netCDF4 via h5py

numpydantic

Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)

hdmf

The Hierarchical Data Modeling Framework

pynwb

A Python API for working with Neurodata stored in the NWB Format

silx

silx toolkit

h5grove

h5grove is a Python package that provides utilities to design backends serving HDF5 file content: attributes, metadata and data.

awkward0

Manipulate arrays of complex data structures as easily as Numpy.

scitex-io

Universal scientific data I/O with a plugin format registry

openpmd-api

:floppy_disk: C++ & Python API for Scientific I/O

visidata

A terminal spreadsheet multitool for discovering and arranging data

h5json

Specification and tools for representing HDF5 in JSON

cooler

A cool place to store your Hi-C

adios2

Next generation of ADIOS developed in the Exascale Computing Program

spec2nexus

Converts SPEC data files and scans into NeXus HDF5 files

scippnexus

h5py-like utility for NeXus files with seamless scipp integration

legend-pydataobj

LEGEND Python Data Objects

hdf5array

HDF5 File-backed arrays for Python

deepdish

Flexible HDF5 saving/loading and other data science tools from the University of Chicago

pycgns

A Python package for CGNS

nxstools

NeXus command-line tools for setting NeXus tango servers and preparing their configurtation

legend-lh5io

LEGEND HDF5 I/O in Python

kalanos

Audit Robotics data before you train on it. Scores LeRobot, HDF5, MCAP, ROS 2, CSV and JSON recordings for timing, signal integrity and motion quality.

cpdatakit

Schema-first Python toolkit for validating, normalizing, inspecting, and visualizing scientific and engineering datasets.

h5io-browser

Easy navigation and data storage for HDF5