Harmonization Python Packages

neurocombat

Harmonization of multi-site imaging data with ComBat (Python)

intensity-normalization

Normalize MR image intensities in Python

maldibatchkit

Batch-effect correction methods for MALDI-TOF spectra in clinical AMR prediction workflows

neurocombat-sklearn

Harmonizing neuroimaging data across sites. Implementation of neurocombat using sklearn format

homonim

Correct drone, aerial and satellite imagery to surface reflectance.

harmonydata

The Harmony Python library: a research tool for psychologists to harmonise data and questionnaire items. Open source.

rastersmith

RasterSmith is a package to preprocess different NASA Earth observing satellite data products into common resolution, spatial reference, and format for easy analysis and processing across sensors.

mosaic-harmonize

MOSAIC: Multi-site Optimal-transport Shift Alignment with Interval Calibration for clinical data harmonization