Haplotypes Python Packages

haplokit

CLI-first haplotype viewer with bcftools-like selectors, C++ backend acceleration, and Python plotting.

gretel

An algorithm for recovering potential haplotypes from metagenomes

phase-extender

A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.

phase-stitcher

a python program to stitch the ReadBack phased haplotypes in F1 hybrids.