Gtf Python Packages

deeptoolsintervals

A python library for constructing interval trees with associated exon/annotation information

gffbase

🧬 GFFBase — Rust+DuckDB GFF3/GTF engine

filterx

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

fuc

Frequently used commands in bioinformatics

pygtftk

A python package and a set of shell commands to handle GTF files

mrdoxmrgt

An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.

gtci

An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.

genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

gtfast

Lift annotations from a GTF file to an adata object.

collect-columns

Retrieve a column for each in a set of tables, placing them in a single output table.

gffy

gffy — A fast GFF statistics extractor. Well, because the world needed another one.

gtfr

An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.

gtfg

An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.

gtfh

An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.

gtfd

An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.

gtfj

An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.