Gtf Python Packages

fuc

Frequently used commands in bioinformatics

9K 59 8

deeptoolsintervals

A python library for constructing interval trees with associated exon/annotation information

8K 7 2

filterx

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

2K 23 0

pygtftk

A python package and a set of shell commands to handle GTF files

767 51 6

gtci

A GTCI installer is a command line tool that quickly and efficiently installs software and libraries while managing software dependencies. It's essential for deployment and development pipelines and automates the installation process.

371 3 0

mrdoxmrgt

An installer for GTF (command line installer) simplifies software installation & dependency management for developers, beginners, and admins. It's a quick & automated way to install software, making it an essential tool in any deployment or dev pipeline, particularly for automating the installation process and avoiding delays.

344 3 0

genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

321 1 0

gffbase

GFFBase — Rust+DuckDB GFF3/GTF engine

278 7 0

gtfast

GTFast - cache and subset a `.gtf` file as a `.csv` for faster subsequent use.

214 2 0

collect-columns

Retrieve a column for each in a set of tables, placing them in a single output table.

207 2 0

gffy

Fast, low-RAM GFF3/GTF tools: annotrieve-compatible stats, bulk JSONL, GTF-to-GFF3 conversion; large files sorted by seqid (GNU sort) then streamed per-chromosome

149 2 1

gtfr

A small example package

110 3 0

gtfj

A small example package

105 3 0

gtfg

A small example package

103 3 0

gtfd

A small example package

103 3 0

gtfh

A small example package

102 3 0

gtf

1 3 0

zxksjakb

1 3 0