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Gsea Python Packages

Python packages with the GitHub topic gsea. Sorted by relevance, with stars and monthly downloads.
zqfang
gseapy

Gene Set Enrichment Analysis in Python

139K 695 135
DBRetina
dbretina

DBRetina Python Package

4K 1 3
noamteyssier
idea-bio

Integrated Differential Expression and Annotation

525 6 0
jsmccabe1
sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

350 5 0
krassowski
gsea-api

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

240 16 2
genepattern
scgsea

An adaptation of gene set enrichment analysis to clustered single cell data.

68 0 0
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