Global Health Python Packages

pyfastaq

Python3 scripts to manipulate FASTA and FASTQ files

ariba

Antimicrobial Resistance Identification By Assembly

circlator

A tool to circularize genome assemblies

iva

Iterative Virus Assembler

albatradis

Comparative TraDIS analysis

tiptoft

Predict plasmids from uncorrected long read data

plasmidpredictor

Predict plasmids from uncorrected long read data

openemr-agent

Healthcare AI agent sidecar for OpenEMR — clinical decision support with drug interaction checking, patient data retrieval, and safety verification

seroba

k-mer based Pipeline to identify the Serotype from Illumina NGS reads