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Gff Python Packages

Python packages with the GitHub topic gff. Sorted by relevance, with stars and monthly downloads.
sbslee
fuc

Frequently used commands in bioinformatics

7K 58 8
moshi4
pygenomeviz

A genome visualization python package for comparative genomics

5K 403 25
NickJD
storf-reporter

StORF-Reporter - A a tool that takes an annotated genome and returns missing CDS genes (Stop-to-Stop) from unannotated regions.

4K 17 2
scbirlab
bioino

💻 Interconverting FASTA, GFF, and CSV.

3K 1 0
ginkgobioworks
edge-genome

Efficiently keep track of changes to genomes

1K 38 4
mirtop
mirtop

Small RNA-seq annotation

780 20 25
Kuanhao-Chao
gffbase

GFFBase — Rust+DuckDB GFF3/GTF engine

718 7 0
NAL-i5K
gff3tool

Python programs for processing GFF3 files

341 104 27
mvinyard
gtfast

Lift annotations from a GTF file to an adata object.

247 2 0
biowdl
collect-columns

Retrieve a column for each in a set of tables, placing them in a single output table.

224 2 0
se7en69
bio-wrangler

Bio-Wrangler is a Python package for bioinformatics data wrangling. It helps load, filter, merge, and summarize bioinformatics datasets from formats like FASTA, FASTQ, VCF, and GFF.

189 1 0
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