Gff Python Packages

fuc

Frequently used commands in bioinformatics

pygenomeviz

A genome visualization python package for comparative genomics

storf-reporter

StORF-Reporter - A a tool that takes an annotated genome and returns missing CDS genes (Stop-to-Stop) from unannotated regions.

bioino

💻 Interconverting FASTA, GFF, and CSV.

edge-genome

Efficiently keep track of changes to genomes

mirtop

Small RNA-seq annotation

gffbase

GFFBase — Rust+DuckDB GFF3/GTF engine

gff3tool

Python programs for processing GFF3 files

gtfast

Lift annotations from a GTF file to an adata object.

collect-columns

Retrieve a column for each in a set of tables, placing them in a single output table.

bio-wrangler

Bio-Wrangler is a Python package for bioinformatics data wrangling. It helps load, filter, merge, and summarize bioinformatics datasets from formats like FASTA, FASTQ, VCF, and GFF.