Gff Python Packages

pygenomeviz

A genome visualization python package for comparative genomics

fuc

Frequently used commands in bioinformatics

storf-reporter

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

edge-genome

Genome Engineering Tool

mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming

gff3tool

Python programs for processing GFF3 files

bioino

💻 Interconverting FASTA, GFF, and CSV.

gffbase

GFFBase — Rust+DuckDB GFF3/GTF engine

bio-wrangler

A bioinformatics data wrangling package for FASTA, FASTQ, VCF, and GFF files.

gtfast

GTFast - cache and subset a `.gtf` file as a `.csv` for faster subsequent use.

collect-columns

Retrieve a column for each in a set of tables, placing them in a single output table.