PyRank

Gff Python Packages

Python packages with the GitHub topic gff. Sorted by monthly downloads, with stars and forks.
moshi4
pygenomeviz

A genome visualization python package for comparative genomics

24K 424 26
Kuanhao-Chao
gffbase

🧬 GFFBase — Rust+DuckDB GFF3/GTF engine

3K 11 5
sbslee
fuc

Frequently used commands in bioinformatics

2K 59 8
NickJD
storf-reporter

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

2K 17 2
NAL-i5K
gff3tool

Python programs for processing GFF3 files

1K 105 27
ginkgobioworks
edge-genome

Efficiently keep track of changes to genomes

858 38 4
mirtop
mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming

558 20 25
scbirlab
bioino

💻 Interconverting FASTA, GFF, and CSV.

254 1 0
mvinyard
gtfast

Lift annotations from a GTF file to an adata object.

130 2 0
se7en69
bio-wrangler

Bio-Wrangler is a Python package for bioinformatics data wrangling. It helps load, filter, merge, and summarize bioinformatics datasets from formats like FASTA, FASTQ, VCF, and GFF.

123 2 0
biowdl
collect-columns

Retrieve a column for each in a set of tables, placing them in a single output table.

122 2 0