PyRank

Genotyping By Sequencing Python Packages

Python packages with the GitHub topic genotyping-by-sequencing. Sorted by monthly downloads, with stars and forks.
Gregor-Mendel-Institute
snpmatch

A simple python library to identify the most likely strain from the population

460 10 5
paulmaier
fasta2genotype

Convert STACKS fasta to many genotype formats

389 6 3
dantaki
sv2

Support Vector Structural Variation Genotyper

138 59 9
bbeckley-hub
staphscope

StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factors, plasmid profiling, and lineage prediction from whole genome sequencing data. Designed specifically for MRSA research

1 36 1
bbeckley-hub
staphscope-typing-tool

StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factors, plasmid profiling, and lineage prediction from whole genome sequencing data. Designed specifically for MRSA research

0 36 1