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Genotyping By Sequencing Python Packages

Python packages with the GitHub topic genotyping-by-sequencing. Sorted by relevance, with stars and monthly downloads.
Gregor-Mendel-Institute
snpmatch

A simple python library to identify the most likely strain given the SNPs for a sample

901 10 5
dantaki
sv2

Support Vector Structural Variation Genotyper

217 59 9
bbeckley-hub
staphscope-typing-tool

StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factors, plasmid profiling, and lineage prediction from whole genome sequencing data. Designed specifically for MRSA research

1 26 0
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