PyRank

Genotype Python Packages

Python packages with the GitHub topic genotype. Sorted by relevance, with stars and monthly downloads.
limix
pandas-plink

PLINK reader for Python.

18K 89 23
apriha
lineage

tools for analyzing and exploring genetic relationships

2K 175 28
sowpatilab
atarva

ATaRVa - Analysis of Tandem Repeat Variation

2K 20 1
shz9
magenpy

Modeling and Analysis of (Statistical) Genetics data in python

1K 18 5
sbslee
pypgx

A Python package for pharmacogenomics (PGx) research

1K 88 19
inumanag
aldy

A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymorphic and structurally variant genes

1K 70 23
Gregor-Mendel-Institute
snpmatch

A simple python library to identify the most likely strain given the SNPs for a sample

919 10 5
dvitale199
the-real-genotools

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

408 36 8
caleblareau
mgatk

mgatk: mitochondrial genome analysis toolkit

293 112 28
ArnovanHilten
gennet-forked

Framework for Interpretable Neural Networks

252 116 18
hall-lab
svtyper

Bayesian genotyper for structural variants

243 136 57
dantaki
sv2

Support Vector Structural Variation Genotyper

222 59 9
cge-tubingens
ideal-genom-qc

Package perform a variety of genomic analysis

167 1 1
LuisGiraldo86
ideal-genom

Package to performa a variety of genomic analysis

145 0 0
Computational-Genomics-BSC
plink-bed-reader

Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in Python.

136 2 0