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Genotype Phenotype Python Packages

Python packages with the GitHub topic genotype-phenotype. Sorted by monthly downloads, with stars and forks.
P2GX
gpsea

A Python library for discovery of genotype-phenotype associations

2K 12 1
mmdebrahimi
dna-decode

Deterministic, interpretable genome→phenotype decoder: calls antibiotic/antiviral/antifungal resistance from DNA + names the exact genes/mutations driving each call. Spans bacteria, M. tuberculosis, fungi, HIV-1 & SARS-CoV-2 — independently validated on FREE measured wet-lab labels (EBI AMR Portal, Stanford HIVDB). Not a clinical tool.

795 0 0
monarch-initiative
genophenocorr

A Python library for discovery of genotype-phenotype associations

95 12 1
    • Original data from PyPI, GitHub, and OSV; downloads served through ClickHouse
    • Sources & methodology