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Genotype Phenotype Python Packages

Python packages with the GitHub topic genotype-phenotype. Sorted by relevance, with stars and monthly downloads.
mmdebrahimi
dna-decode

Deterministic, interpretable genome→phenotype decoder: calls antibiotic/antiviral/antifungal resistance from DNA + names the exact genes/mutations driving each call. Spans bacteria, M. tuberculosis, fungi, HIV-1 & SARS-CoV-2 — independently validated on FREE measured wet-lab labels (EBI AMR Portal, Stanford HIVDB). Not a clinical tool.

3K 0 0
P2GX
gpsea

A Python library for discovery of genotype-phenotype associations

1K 12 1
monarch-initiative
genophenocorr

A Python library for discovery of genotype-phenotype associations

175 12 1
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