Genomics Visualization Python Packages

pygenomeviz

A genome visualization python package for comparative genomics

pycirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

trackhub

create, manage, and upload track hubs for use in the UCSC genome browser

segway

Application for semi-automated genomic annotation.

kitikiplot

KitikiPlot A Python library to visualize categorical sliding window data

jbrowse-jupyter

A python package for showing JBrowse views

genomap

Genomap converts tabular gene expression data into spatially meaningful images.

genovi

Generates full genome images from a gbff file

covviz

Multi-sample coverage browser

gbkviz

Simple web application to visualize and compare genomes in Genbank files

divbrowse

A web application for interactive visualization and exploratory data analysis of variant call matrices

gene2tab

This script is used to convert the output of ABRICATE tabulated output into a matrix samples with the genes as columns and the presence/absence of the gene as the values.

exp-heatmap

Extended Cross-Population (ExP) Heatmap

tinycov

Standalone command line tool to visualize coverage from a BAM file

python-outbreak-info

Python interface to Outbreak.info, powered by GISAID

mgcplotter

Microbial Genome Circular plotting tool using Circos

exp-selection

No description available

wigman

Generate heatmap plots from genomic BigWig data

omacase

a tool to analyze optical mapping data, with _de novo_ repeat motif detection and analysis capabilities

python-outbreak-data

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info