PyRank

Genomics Data Python Packages

Python packages with the GitHub topic genomics-data. Sorted by monthly downloads, with stars and forks.
BiocPy
summarizedexperiment

Container class for genomic experiments

9K 7 2
ghga-de
hexkit

The German Human Genome-Phenome Archive - a secure omics data infrastructure consisting of a Python microservice backend and an Angular frontend

5K 8 0
ghga-de
ghga-service-commons

The German Human Genome-Phenome Archive - a secure omics data infrastructure consisting of a Python microservice backend and an Angular frontend

4K 8 0
GenomicMedLab
wags-tails

Data acquisition tools for Wagnerds

3K 2 0
ghga-de
ghga-connector

The German Human Genome-Phenome Archive - a secure omics data infrastructure consisting of a Python microservice backend and an Angular frontend

2K 8 0
ML-Bioinfo-CEITEC
genomic-benchmarks

Benchmarks for classification of genomic sequences

2K 184 24
ghga-de
ghga-transpiler

The German Human Genome-Phenome Archive - a secure omics data infrastructure consisting of a Python microservice backend and an Angular frontend

1K 8 0
ghga-de
ghga-jsonsubschema

The German Human Genome-Phenome Archive - a secure omics data infrastructure consisting of a Python microservice backend and an Angular frontend

1K 8 0
ghga-de
schemapack

The German Human Genome-Phenome Archive - a secure omics data infrastructure consisting of a Python microservice backend and an Angular frontend

960 8 0
ghga-de
ghga-arcticfreeze

The German Human Genome-Phenome Archive - a secure omics data infrastructure consisting of a Python microservice backend and an Angular frontend

877 8 0
ghga-de
ghga-validator

The German Human Genome-Phenome Archive - a secure omics data infrastructure consisting of a Python microservice backend and an Angular frontend

589 8 0
HallLab
pandas-genomics

Pandas ExtensionDtypes for dealing with genomics data

482 48 8
remytuyeras
haplodynamics

A python library to develop genomic data simulators

347 4 0
jolespin
compositional

Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizations.

320 30 0
IPK-BIT
divbrowse

A web application for interactive visualization and exploratory data analysis of variant call matrices

271 23 4
Rajkanwars15
bioquik

Fast FM-index toolkit for CG-anchored DNA motif counting in FASTA files with parallel processing and optional visualization.

201 2 0
outbreak-info
python-outbreak-info

Python package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info

122 6 3
danymukesha
ensembl-variant-lookup

Python tool built for a user-friendly interface for searching individual variants, batch queries, and exploring gene regions from the Ensembl database.

108 0 0
histolab
gdc-api-wrapper

Genomic Data Commons API wrapper

81 8 0
ReddyLab
ggr-cwl-ipynb-gen

Jupyter notebook generator to download and execute the processing files for GGR related datasets

63 0 6