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Genomic Data Analysis Python Packages

Python packages with the GitHub topic genomic-data-analysis. Sorted by relevance, with stars and monthly downloads.
ArpiarSaundersLab
annsql

The AnnSQL package enables SQL based queries on AnnData objects.

2K 41 2
rjdkmr
gcmapexplorer

Genome Contact Map Explorer - gcMapExplorer. Visit:

1K 21 9
michaelgruenstaeudl
airpg

A package to automatically access the inverted repeats of archived plastid genomes

1K 4 1
bobeobibo
phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

729 52 15
kishwarshafin
helen

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

549 73 12
xinglab-ai
genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

525 19 5
FunctionLab
selene-sdk

a framework for training sequence-level deep learning networks

487 401 91
ikergarcia1996
gene2tab

Creates a table with the presence/absence of genes in samples

203 0 0
mt1022
gppy

[G]enomic [P]ositioning with [Py]thon

187 14 2
cellular-genomics
firecaller

FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) from Hi-C data

160 5 1
ccneko
omacase

an open-source (GPLv3) standalone Python package to analyze optical mapping data, with de novo repeat motif detection and analysis capabilities

60 2 0
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