Genomes Python Packages

gnomad

Hail helper functions for the gnomAD project and Translational Genomics Group

tnseq-transit

Repository for the TRANSIT and TPP tools developed by the Ioerger Lab

storf-reporter

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

helen

RNN based assembly HELEN. It works paired with MarginPolish.

transit1

TRANSIT is a tool for the analysis of Tn-Seq data. It provides an easy to use graphical interface and access to three different analysis methods that allow the user to determine essentiality in a single condition as well as between conditions.

cpg-gnomad

Hail utilities for the Genome Aggregation Database

metasbt

A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees

bio-juno

read data generator