Genome Assembly Python Packages

camsa

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

pyfastg

A minimal Python library for parsing FASTG files

teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

pypangraph

A bioinformatic toolkit to align genome assemblies into pangenome graphs

ragtag

Fast reference-guided genome assembly scaffolding

chromdetect

Detect chromosome-level scaffolds in genome assemblies with inconsistent naming conventions

rsidbuildtranslator

A tool for adding genomic IDs - rsIDS, or chromosome and positions from GRCh37 or GRCh38

helen

RNN based assembly HELEN. It works paired with MarginPolish.

metagenomescope

Visualization tool for (meta)genome assembly graphs

instagraal

Large genome reassembly based on Hi-C data

cobra-meta

COBRA (Contig Overlap Based Re-Assembly) is a bioinformatics tool to get higher quality viral genomes assembled from metagenomes of short paired-end reads. COBRA was written in Python. COBRA has so far only been tested on assembled contigs from metaSPAdes, IDBA_UD, and MEGAHIT.

redundans

No description available

makura

NCBI Genome downloader

strandweaver

AI-Powered Multi-Technology Genome Assembler with GPU Acceleration