Genome Assembly Python Packages

camsa

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

3K 25 5

pyfastg

A minimal Python library for parsing FASTG files

2K 8 0

teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

2K 52 4

ragtag

Tools for fast and flexible genome assembly scaffolding and improvement

969 563 56

chromdetect

Detect chromosome-level scaffolds in genome assemblies with inconsistent naming conventions

770 0 1

metagenomescope

Visualization tool for (meta)genome assembly graphs

682 47 9

rsidbuildtranslator

A tool for adding genomic IDs - rsIDS, or chromosome and positions from GRCh37 or GRCh38

670 0 0

instagraal

Large genome reassembly based on Hi-C data, continuation of GRAAL

664 43 10

helen

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

549 73 12

cobra-meta

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

313 83 11

pypangraph

A bioinformatic toolkit to align genome assemblies into pangenome graphs

231 125 6

redundans

No description available

192 177 22

makura

NCBI Genome downloader

168 0 0

strandweaver

AI-Powered Multi-Technology Genome Assembler with GPU Acceleration

85 4 1