PyRank

Genome Annotation Python Packages

Python packages with the GitHub topic genome-annotation. Sorted by relevance, with stars and monthly downloads.
oschwengers
bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

3K 642 79
gaius-augustus
bricks2marble

Pre- and postprocessing tools for genome annotation.

2K 2 0
tomsbiolab
aegis-bio

Annotation Extraction Genomic Integration Suite.

2K 0 0
iliapopov17
kegganog

🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations

2K 35 4
michaelgruenstaeudl
plastburstalign

A Python tool to extract and align genes, introns, and intergenic spacers across hundreds of plastid genomes using associative arrays

2K 1 0
brenodupin
tigre

tigre - Tool for InterGenic Region Extraction

2K 2 0
ginkgobioworks
edge-genome

Efficiently keep track of changes to genomes

1K 38 4
haessar
peaks2utr

A robust, parallelized Python CLI for annotating three_prime_UTR

844 23 2
Kuanhao-Chao
gffbase

GFFBase — Rust+DuckDB GFF3/GTF engine

718 7 0
nextgenusfs
funannotate

funannotate: eukaryotic genome annotation pipeline

476 386 92
Kuanhao-Chao
lifton

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

456 123 11
ga4gh
ga4gh

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

420 99 91
brenodupin
gdt

GDT is a tool for gene dictionary management, works with annotated genomes, handles .gdict and GFF3 files, and provides both programmatic and interactive interface.

293 3 0
moshi4
pybarrnap

Python implementation of barrnap (Bacterial ribosomal RNA predictor)

269 27 0
biocpy
txdb

Python interface to access and manipulate genome annotations in TxDB SQLite format.

181 1 0
lmc297
sismis

Machine learning-based secretion system annotation tool

133 3 0
BiocPy
orgdb

Access OrgDb Annotation objects

87 0 0
ga4gh
ga4gh-server

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

45 99 91