Gene Python Packages

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

dbretina

DBRetina Python Package

digitalcellsorter

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

scigantic-pubchem

A PubChemPy-inspired PUG REST client with throttle-aware retry, caching, BioAssay/gene/protein/Tox21 data, live cross-references into ChEMBL, BindingDB and the PDB, and a local parquet mirror for bulk CID lookups.

pygtftk

A python package and a set of shell commands to handle GTF files

scprint

single cell foundation model for Gene network inference and more

omim-cli

omim-cli — client for OMIM (Online Mendelian Inheritance in Man), not official

camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

gene-map

Tool for converting between various gene ids

elucidatacmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools