Gene Python Packages

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

dbretina

DBRetina Python Package

digitalcellsorter

Toolkit for analysis and identification of cell types from heterogeneous single cell RNA-seq data

scprint

single cell foundation model for Gene network inference and more

pygtftk

A python package and a set of shell commands to handle GTF files

gene-map

Tool for converting between various gene ids

camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.

elucidatacmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools