Gene Set Enrichment Python Packages

goatools

Python library to handle Gene Ontology (GO) terms

dbretina

DBRetina Python Package

bio2bel-msig

Integration of pathway-related information from MSigDB in BEL

sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

gsea-api

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

gopiscator

GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.

tapir-rna

Transcriptiome Analysis in Python Imported from R