PyRank

Gene Set Enrichment Python Packages

Python packages with the GitHub topic gene-set-enrichment. Sorted by monthly downloads, with stars and forks.
tanghaibao
goatools

Python library to handle Gene Ontology (GO) terms

24K 906 211
DBRetina
dbretina

DBRetina Python Package

2K 1 3
krassowski
gsea-api

Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)

396 16 2
bio2bel
bio2bel-msig

Integration of pathway-related information from MSigDB in BEL

265 2 0
dbespiatykh
gopiscator

GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.

157 0 0
jsmccabe1
sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

56 6 0
fcomitani
tapir-rna

Transcriptiome Analysis in Python Imported from R

50 2 0