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Gene Set Enrichment Analysis Python Packages

Python packages with the GitHub topic gene-set-enrichment-analysis. Sorted by monthly downloads, with stars and forks.
leelieber2025
scatrans

A Python package for mechanism-aware single-cell differential analysis. It partitions DE genes into transcription-driven versus stabilization-driven classes using nascent (unspliced) RNA residuals. Also supports conventional DE, functional enrichment (ORA, GSEA, GO, KEGG), and visualization.

740 4 0
shayuanxukuang
pyfgsea

Fast preranked GSEA and rolling-window trajectory enrichment with a Rust core.

294 2 0
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