PyRank

Gene Regulation Python Packages

Python packages with the GitHub topic gene-regulation. Sorted by monthly downloads, with stars and forks.
asntech
pyjaspar

pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

30K 39 4
aertslab
arboreto

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

6K 71 37
thirtysix
tfbs-footprinting

Pipeline: Identification of cis-regulatory elements by matrix scoring and conservation.

2K 3 0
cantinilab
circe-py

Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.

1K 36 2
thirtysix
tfbs-footprinting3

Pipeline: Identification of cis-regulatory elements by matrix scoring and analysis of supporting empirical biological data.

631 6 1
saezlab
omnipath-client

Python client for the new OmniPath web APIs

299 0 0
NicholasEhsanRoy
nudge-bio

NUDGE (Node/edge Ultrasensitivity Diagnostic for Gene-regulatory Effects). My "Built with Claude: Life Sciences" Hackathon project.

243 1 0
omics-datascience
bioapi-sdk

A powerful abstraction of gene databases

112 8 0
shao-lab
mamotif

An integrative toolkit for detecting cell type-specific regulators

108 2 0
asntech
improse

Integrated workflow to predict super-enhancers and compute feature importance

48 8 4