PyRank

Gene Ontology Python Packages

Python packages with the GitHub topic gene-ontology. Sorted by relevance, with stars and monthly downloads.
tanghaibao
goatools

Python library to handle Gene Ontology (GO) terms

32K 888 213
biolink
ontobio

python library for working with ontologies and ontology associations

7K 133 33
jdrudolph
goenrich

GO enrichment with python -- pandas meets networkx

580 88 22
biolink
biolinkmg

Schema and generated objects for biolink data model and upper ontology

411 240 85
jsmccabe1
sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

350 5 0
JLSteenwyk
gokit

Command-line toolkit for Gene Ontology (GO) enrichment analysis

335 8 0
moshi4
fastdtlmapper

Fast genome-wide DTL(Duplication-Transfer-Loss) event mapping tool

327 17 5
dbespiatykh
gopiscator

GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.

206 0 0
bio2bel
bio2bel-go

A Bio2BEL package for converting the Gene Ontology (GO) to BEL

145 1 0