Gene Ontology Python Packages

goatools

Python library to handle Gene Ontology (GO) terms

ontobio

python library for working with ontologies and ontology associations

risk-network

RISK: a next-generation tool for biological network annotation and visualization

goenrich

GO enrichment with python -- pandas meets networkx

himalayas

HiMaLAYAS: enrichment-based annotation and visualization of hierarchically clustered matrices

biolinkmg

Schema and generated objects for biolink data model and upper ontology

fastdtlmapper

Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method

gokit

Command-line toolkit for Gene Ontology (GO) enrichment analysis

gopiscator

GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.

bioapi-sdk

A powerful abstraction of gene databases

bio2bel-go

A Bio2BEL package for converting the Gene Ontology (GO) to BEL

sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.