Genbank Python Packages

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

pygenomeviz

A genome visualization python package for comparative genomics

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

cazy-webscraper

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.

barcodefinder

All-in-one solution for discovering novel DNA barcode

ogu

a toolbox for utilize organelle genomic data

dna-features-viewer-lite

Plot features from DNA sequences (e.g. Genbank) with Python

genmine

GenBank Record downloader for taxonomists

dnadesign

Python bindings for dnadesign

gbkviz

Simple web application to visualize and compare genomes in Genbank files

genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

makura

NCBI Genome downloader

gbcrawler

GenBank complete parser

gbgb

A Python package for Biopython that gives feature annotations from GenBank records a new and better life

multisub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.