Genbank Python Packages

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

pygenomeviz

A genome visualization python package for comparative genomics

snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

cazy-webscraper

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.

barcodefinder

a toolbox for utilize organelle genomic data

genmine

GenBank Record downloader for taxonomists

dnadesign

A lua package for designing DNA.

ogu

a toolbox for utilize organelle genomic data

gbkviz

Easy-to-use web application for visualization and comparison of genomes in Genbank file

dna-features-viewer-lite

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.

makura

NCBI Genome downloader

gbcrawler

GenBank complete parser

multisub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

gbgb

A Python package for Biopython that gives feature annotations from GenBank records a new and better life