fungi
Fungal Validation and Identification Pipeline
GenBank Record downloader for taxonomists
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
Fast ITS region detection and extraction for Python, powered by in-process HMM search via pyhmmer
