PyRank

Functional Genomics Python Packages

Python packages with the GitHub topic functional-genomics. Sorted by relevance, with stars and monthly downloads.
TheJacksonLaboratory
geneweaver-db

The GeneWeaver database interaction code.

2K 2 0
TheJacksonLaboratory
geneweaver-client

A client library for the integration and analysis of heterogeneous functional genomics data.

1K 3 0
TheJacksonLaboratory
geneweaver-core

A client library for the integration and analysis of heterogeneous functional genomics data.

933 3 0
ArcInstitute
screenpro2

Flexible analysis of high-content CRISPR screening

889 33 7
churchmanlab
genewalk

Determine gene function based on network embeddings.

517 134 17
umutcakir
shiftscan

ShiftSCAN systematically detects chimeric and non-chimeric peptide sources by analyzing multi-frame translations in nucleotide sequences.

296 1 1
snap-stanford
kgwas

KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph

190 79 10
jsmccabe1
sceptr-profiling

Statistical Characterisation of Expression Profiles in Transcriptomes

167 5 0