PyRank

Functional Genomics Python Packages

Python packages with the GitHub topic functional-genomics. Sorted by relevance, with stars and monthly downloads.
ArcInstitute
screenpro2

Flexible analysis of high-content CRISPR screening

2K 32 7
TheJacksonLaboratory
geneweaver-db

The GeneWeaver database interaction code.

1K 2 0
TheJacksonLaboratory
geneweaver-client

A Python Client for the Geneweaver API

1K 3 0
TheJacksonLaboratory
geneweaver-core

The core of the Jax-Geneweaver Python library

832 3 0
churchmanlab
genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning

486 134 17
jsmccabe1
sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

350 5 0
umutcakir
shiftscan

ShiftScan CLI: shiftscan

229 1 1
snap-stanford
kgwas

KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph

198 79 10