PyRank

Functional Genomics Python Packages

Python packages with the GitHub topic functional-genomics. Sorted by monthly downloads, with stars and forks.
ArcInstitute
screenpro2

Flexible analysis of high-content CRISPR screening

2K 34 7
TheJacksonLaboratory
geneweaver-db

The GeneWeaver database interaction code.

1K 2 0
TheJacksonLaboratory
geneweaver-client

A client library for the integration and analysis of heterogeneous functional genomics data.

1K 3 0
TheJacksonLaboratory
geneweaver-core

A client library for the integration and analysis of heterogeneous functional genomics data.

719 3 0
churchmanlab
genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning

373 133 17
umutcakir
shiftscan

ShiftSCAN systematically detects chimeric and non-chimeric peptide sources by analyzing multi-frame translations in nucleotide sequences.

143 1 1
snap-stanford
kgwas

KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph

123 78 10
jsmccabe1
sceptr-profiling

Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are distributed across the expression gradient, with built-in significance testing for single samples. Great for non-model organisms, clinical isolates, and unreplicated datasets.

56 6 0