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Freesurfer Python Packages

Python packages with the GitHub topic freesurfer. Sorted by relevance, with stars and monthly downloads.
aramis-lab
pydra-freesurfer

Pydra tasks for FreeSurfer designed for Clinica

20K 5 1
raamana
visualqc

Assistive tool for the quality control of neuroimaging data

3K 76 14
aramis-lab
clinica

Software platform for clinical neuroimaging studies

3K 279 90
raamana
graynet

Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)

597 38 9
fphammerle
freesurfer-surface

Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format

492 9 0
dfsp-spirit
brainload

Load FreeSurfer brain imaging data with minimal cognitive load.

462 10 1
fphammerle
freesurfer-volume-reader

Python script & library to read hippocampal subfield volumescomputed by Freesurfer & ASHS

298 5 1
chabld
subcortexmesh

A python toolbox for automated conversion of subcortical segmentation volumes to surface meshes and computation of vertex-wise metrics

294 0 1
aramis-lab
clinica-pydra-freesurfer

Pydra tasks for FreeSurfer designed for Clinica

273 5 1
fphammerle
freesurfer-stats

Python Library to Read FreeSurfer's Cortical Parcellation Anatomical Statistics

240 15 1
NYUMedML
dartseg

Package for Brain Segmentation

181 69 24
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