Freesurfer Python Packages

pydra-freesurfer

Pydra tasks for FreeSurfer designed for Clinica

visualqc

Assistive tool for the quality control of neuroimaging data

clinica

Software platform for clinical neuroimaging studies

graynet

Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)

freesurfer-surface

Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format

brainload

Load FreeSurfer brain imaging data with minimal cognitive load.

freesurfer-volume-reader

Python script & library to read hippocampal subfield volumescomputed by Freesurfer & ASHS

subcortexmesh

A python toolbox for automated conversion of subcortical segmentation volumes to surface meshes and computation of vertex-wise metrics

clinica-pydra-freesurfer

Pydra tasks for FreeSurfer designed for Clinica

freesurfer-stats

Python Library to Read FreeSurfer's Cortical Parcellation Anatomical Statistics

dartseg

Package for Brain Segmentation