Freesurfer Python Packages

pydra-freesurfer

Pydra tasks for FreeSurfer designed for Clinica

clinica

Software platform for clinical neuroimaging studies

visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

graynet

Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)

freesurfer-surface

Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format

brainload

A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.

freesurfer-volume-reader

Python script & library to read hippocampal subfield volumescomputed by Freesurfer & ASHS

freesurfer-stats

Python Library to Read FreeSurfer's Cortical Parcellation Anatomical Statistics

dartseg

Package for Brain Segmentation

subcortexmesh

A toolbox for automated conversion of subcortical segmentation volumes to surface meshes, computation of vertex-wise metrics and surface-based analysis

clinica-pydra-freesurfer

Pydra tasks for FreeSurfer designed for Clinica