Foundation Model Python Packages

scgpt

Large-scale generative pretrain of single cell using transformer.

loopquest

A Production Tool for Embodied AI

spatialformer

The spatial representation learning for single-cell spatial transcriptomics

segmate

SegMate package

guardrails-ct

Adding guardrails to large language models.

moozy

A patient-first foundation model for computational pathology. Two-stage training (self-supervised slide encoding + supervised case-level alignment) on 77K+ public whole-slide images across 333 clinical tasks.

naturalminer

Mine data for patterns described in natural language

trident-test

A package for preprocessing whole-slide images.