Format Conversion Python Packages

notateit

NotateIt Viewer Remake is a cross-platform GUI and CLI tool to open, view, and extract assets from the old proprietary .nat presentation format. Built with Python and PySide6, it features a presentation mode and headless data extraction, rescuing embedded images and text into JSON. Ideal for digital archiving and format recovery.

genome-format-converters

A unified Python CLI for 30 bioinformatics file-format conversions (VCF, GFF3, GTF, BED, GenBank, FASTA, FASTQ, BAM, EIGENSTRAT, PLINK, MAF, MUMmer, HMMER, Newick) with consistent flags, batch mode, and a published Stage 1 benchmark vs convertf, plink2, AGAT, gffread, UCSC, EMBOSS, pyhmmer.