PyRank

Fluorescence Python Packages

Python packages with the GitHub topic fluorescence. Sorted by relevance, with stars and monthly downloads.
MartinPdeS
rosettax

Interactive flow cytometry calibration software for fluorescence and scattering workflows, with FCS loading, peak finding, fitting, profiles, and reusable calibration exports.

4K 0 0
Fluorescence-Tools
labellib

Library for coarse-grained simulations of probes flexibly coupled to biomolecules.

4K 9 3
OpenSMFS
fretbursts

Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.

3K 13 12
aelefebv
nellie

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

2K 95 13
fluorescence-tools
tttrlib

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy)

2K 23 3
cardiacvision
opticalmapping

An open-source python library for the processing of fluorescence video data

1K 17 2
cytoflow
cytoflow

A Python toolbox for quantitative, reproducible flow cytometry analysis

1K 214 58
RNA-FRETools
lifefit

Analyze fluorescence lifetime and anisotropy decays.

945 9 4
flika-org
flika

An interactive image processing program for biologists written in Python.

901 26 2
cardiacvision
optimap

An open-source python library for the processing of fluorescence video data

860 17 2
cicwi
corrct

Physically corrected projectors for X-ray induced emission CT.

822 9 3
cgohlke
icsdll

Interface to the image correlation spectroscopy library ICSx64.dll.

615 2 1
Chirlmin-Joo-lab
papylio

Single-molecule fluorescence trace extraction and analysis

597 1 4
landoskape
cellector

A pipeline and GUI for determining which ROIs match features in a fluorescence image.

507 2 0
ggirelli
ifpd

iFISH Probe Design: a Python3 package to build iFISH probes.

452 12 6
kasasxav
imswitch

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

436 85 39
Sun-Lab-NBB
cindra

Provides pipelines for processing neural imaging data and tracking Regions of Interest across multiple recordings.

372 0 0
lawrencecollins
calciumflexanalysis

Processing and analysis of calcium flex assays

345 0 0
maurosilber
smo

Robust and unbiased estimation of the background distribution for fluorescence microscopy.

311 13 5
scbirlab
hts-tools

🏮 Parsing and analysing platereader absorbance and fluorescence data.

299 0 1
royerlab
cytoself

An image feature extractor with self-supervised learning

256 85 17
VicidominiLab
birfi

Blind instrument response function identification from fluorescence decays

176 1 1
drewmee
pyeem

Python library for the preprocessing, correction, deconvolution and analysis of Excitation Emission Matrices (EEMs).

176 7 1
ggirelli
fish-prode

A FISH probe design web interface.

163 12 6