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Fluorescence Microscopy Imaging Python Packages

Python packages with the GitHub topic fluorescence-microscopy-imaging. Sorted by relevance, with stars and monthly downloads.
cgohlke
sdtfile

Read Becker & Hickl SDT files.

10K 14 8
cgohlke
ptufile

Read and write PicoQuant PTU and related files (PHU, PCK, PCO, PFS, PUS, PQRES, PQDAT, PQUNI, SPQR, and BIN).

9K 18 1
cgohlke
lfdfiles

Laboratory for Fluorescence Dynamics (LFD) file formats.

8K 11 4
phasorpy
phasorpy

An open-source Python library for the analysis of luminescence lifetime and hyperspectral images using the phasor approach.

7K 37 15
cgohlke
liffile

Read Leica image files (LIF, LOF, XLIF, XLCF, XLEF, and LIFEXT).

6K 12 1
cgohlke
fbdfile

Read FLIMbox data and related files (FBD, FBF, and FBS.XML).

6K 1 0
cgohlke
chebyfit

Fit exponential and harmonic functions using Chebyshev polynomials

4K 2 1
cgohlke
oiffile

Read Olympus image files (OIF and OIB).

3K 13 1
cgohlke
psf

Point Spread Function calculations for fluorescence microscopy.

3K 44 4
fluorescence-tools
tttrlib

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy)

2K 23 3
joemans3
ams-bp

Advanced Microscopy Simulations - Create realistic fluorescence microscopy data!

1K 3 0
cgohlke
oirfile

Read Olympus/Evident OIR and POIR files.

944 3 1
bbquercus
efishent

RNA smFISH oligos/probes design tool

840 14 0
Dana-Farber-AIOS
pathml

Tools for computational pathology

748 452 89
cgohlke
icsdll

Interface to the image correlation spectroscopy library ICSx64.dll.

615 2 1
wisstock
domb-napari

napari plugin for analyzing fluorescence-labeled proteins redistribution

506 1 0
shanizu
fuse-toolkit

FUSE toolkit supports fluorescent cell image alignment and analysis.

366 0 3
alexblaessle
pyfrp

PyFRAP: A Python based FRAP analysis tool box

302 17 9
Jhsmit
colicoords

Create a coordinate system in rod-shaped cells.

296 26 8
lens-biophotonics
zetastitcher

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

190 47 7
VicidominiLab
birfi

Blind instrument response function identification from fluorescence decays

176 1 1
cgohlke
obffile

Read Imspector object binary format files (OBF and MSR).

121 1 0
cgohlke
napari-lfdfiles

A napari plugin for reading files via lfdfiles

76 11 4
cgohlke
napari-oiffile

A napari plugin for reading files via oiffile

76 13 1
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