Flow Cytometry Python Packages

flowio

A Python library for reading and writing Flow Cytometry Standard (FCS) files

flowutils

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.

flowkit

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

rosettax

Interactive flow cytometry calibration software for fluorescence and scattering workflows, with FCS loading, peak finding, fitting, profiles, and reusable calibration exports.

flowcypy

Open source digital twin framework for flow cytometry, modeling fluidics, light scattering, electronics, triggering, and event generation for extracellular vesicle analysis.

peacoqc-rs

Modern, high-performance flow cytometry tooling for the Rust ecosystem.

xfcs

FCS (3.0, 3.1) data and metadata extractor