File Format Python Packages

uproot

ROOT I/O in pure Python and NumPy.

uproot3

ROOT I/O in pure Python and NumPy.

vcfpy

Python 3 library with good support for both reading and writing VCF

gsd

Read and write GSD files for use with HOOMD-blue.

eqdsk

g-eqdsk reading and writing with identification and conversion between COCOS versions

lib-pod5

Pod5: a high performance file format for nanopore reads.

pandas-plink

PLINK reader for Python.

fleep

File format determination library for Python

cooler

A cool place to store your Hi-C

pod5

Pod5: a high performance file format for nanopore reads.

fbdfile

Read FLIMbox data and related files (FBD, FBF, and FBS.XML).

lfdfiles

Laboratory for Fluorescence Dynamics (LFD) file formats.

pyopenvba

Pure-Python reader/writer for VBA macros embedded in Excel / PowerPoint / Word files. Zero dependencies, deterministic round-trip, safe on protected and signed projects.

bjdata

Binary JSON (BJData/UBJSON) Support for Python

openyxdb

Maintained fork of Alteryx's open-source C++ YXDB library.

libresvip

A universal converter for singing voice projects which is cross-platform and multi-lingual

uproot4

ROOT I/O in pure Python and NumPy.

eubi-bridge

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

tivars

A Python library for interacting with TI-(e)z80 (82/83/84 series) calculator files

openqvd

Pure-Rust reader and writer for Qlik QVD files, with Python bindings.

python-openctm

Python Interface for the OpenCTM File Format

ccx-format

Reference reader + writer for CCX (Chaos Cypher eXchange): the open, JSON-LD-native, source-backed knowledge-graph package format. pip install ccx-format

firehose

Interchange format for results for static analysis tools

libbbf

Bound Book Format: A high-performance container format for comics and manga