Fhir Python Packages

fhir-resources

FHIR Resources https://www.hl7.org/fhir/resourcelist.html

fhirclient

Python SMART on FHIR client

fhirpy

FHIR Client for python

fhirpathpy

FHIRPath implementation in Python.

hccinfhir

HCC Algorithm that works with FHIR and 837

pysof

The Helios FHIR Server is an implementation of the HL7® FHIR® standard, built in Rust for high performance and optimized for clinical analytics workloads.

pathling

Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.

fhiry

FHIR to pandas dataframe for data analytics, AI and ML!

mirobody

Turn scattered health data into answers you can trace. Self-hosted AI health data engine for lab reports, wearables and genetics, with a built-in MCP server. Run it with Docker and one LLM key, or keep every model local on llama.cpp.

cumulus-library

A framework for designing, executing, and distributing SQL queries packaged as "studies", e.g., for quality monitoring, clinical research, or public health

sct-py

SNOMED-CT tooling, brought into the 21stC. RF2 → NDJSON → SQLite | Vector | .arrow, | .parquet | .md | refsets | .codelist | MCP | CTV3 & ReadV2 - ready

cumulus-fhir-support

FHIR support code for the Cumulus project

fhircraft

Dynamic Pydantic FHIR modeling package

omh-shim

Convert wearable health data from vendor schemas to Open mHealth schemas.

cumulus-etl

Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

messagefoundry

MessageFoundry Healthcare Interface Engine

fhirspec

FHIR Specification Loader

omophub

Python SDK for OMOP/OHDSI vocabularies - query 11M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 120+ terminologies via simple API

fhir-mcp-server

FHIR MCP Server – helping you expose any FHIR Server or API as a MCP Server.

fhirpath

FHIRPath implementation in Python.

fhir-pyrate

FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.

clinosim

Clinically Realistic Hospital Data Simulator — FHIR R4 synthetic EHR data with physiological coherence. Built at InterSystems.

zato-testing

ESB, SOA, REST, APIs and Cloud Integrations in Python

healthchain

Python SDK for healthcare AI — typed, validated FHIR tools for agents, real-time EHR connectivity, production deployment ✨ 🏥