Fhir Python Packages

fhir-resources

FHIR Resources https://www.hl7.org/fhir/resourcelist.html

2.3M 530 123

fhirpy

FHIR Client for python

1M 212 38

fhirclient

Python SMART on FHIR client

329K 692 242

fhirpathpy

FHIRPath implementation in Python.

70K 75 17

hccinfhir

HCC Algorithm that works with FHIR and 837

46K 49 22

fhiry

FHIR to pandas dataframe for data analytics, AI and ML!

21K 50 9

pathling

Tools that make it easier to use FHIR and clinical terminology within data analytics, built on Apache Spark.

21K 129 23

pysof

The Helios FHIR Server is an implementation of the HL7® FHIR® standard, built in Rust for high performance and optimized for clinical analytics workloads.

7K 39 14

messagefoundry

MessageFoundry Healthcare Interface Engine

6K 1 0

google-fhir-core

Python utilities for working with FHIR, including libraries to build simple, flat FHIR views in BigQuery.

6K 102 16

cumulus-etl

Extract FHIR data, Transform with NLP and DEID tools, and then Load FHIR data into a SQL Database for analysis

4K 25 8

cumulus-fhir-support

FHIR support code for the Cumulus project

3K 1 0

cumulus-library

A framework for designing, executing, and distributing SQL queries packaged as "studies", e.g., for quality monitoring, clinical research, or public health

3K 6 4

omophub

Python SDK for OMOP/OHDSI vocabularies - query 10M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 90+ terminologies via simple API

3K 5 2

omh-shim

Convert wearable health data from vendor schemas to Open mHealth schemas.

2K 0 2

fhirpath

FHIRPath implementation in Python.

2K 34 7

fhirspec

FHIR Specification Loader

2K 3 6

fhircraft

Dynamic Pydantic FHIR modeling package

2K 10 3

healthchain

Python SDK for healthcare AI: connect models to live EHR systems, skip the integration tax 💫 🏥

1K 211 40

fhir-pyrate

FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured information as pandas DataFrames. It can also be used to filter resources using RegEx and SpaCy and download DICOM studies and series.

1K 81 17

fhir-mcp-server

FHIR MCP Server – helping you expose any FHIR Server or API as a MCP Server.

1K 127 46

mcp-clinical-reasoner

Three MCP servers for clinical AI: FHIR R4 query + US Core validation, SNOMED/LOINC/ICD terminology, and drug safety reasoning via FDA labeling — composable, production-ready, Apache-2.0.

1K 0 0

dhti-elixir-base

Base classes for dhti-elixir

1K 4 0

fhir2dataset

Query FHIR apis with SQL, for analytics and ML.

1K 25 3