PyRank

Fasta Python Packages

Python packages with the GitHub topic fasta. Sorted by monthly downloads, with stars and forks.
mdshw5
pyfaidx

Efficient pythonic random access to fasta subsequences

391K 489 78
jupyterlab
jupyterlab-mathjax3

Renderers and renderer extensions for JupyterLab

123K 517 81
lmdu
pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

47K 296 25
pydna-group
pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

19K 231 50
jupyterlab
jupyterlab-geojson

Renderers and renderer extensions for JupyterLab

3K 517 81
tacular-omics
pefftacular

Python library for reading and writing PEFF (PSI Extended FASTA Format) files. PEFF is a superset of FASTA used in proteomics that carries rich per-entry annotations.

3K 1 0
tacular-omics
fastatacular

Pure-Python library for reading and writing FASTA sequence files with UniProt-style header parsing.

3K 0 0
dwpeng
filterx

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

2K 24 0
sbslee
fuc

Frequently used commands in bioinformatics

2K 59 8
jupyterlab
jupyterlab-fasta

Renderers and renderer extensions for JupyterLab

2K 517 81
NickJD
storf-reporter

Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

2K 17 2
tacular-omics
peff-uniprot-fetcher

Generate annotated PEFF files from UniProt accessions, taxonomy IDs, or search queries, using pefftacular.

835 0 0
Kronopt
fastaparser

A Python FASTA file Parser and Writer.

824 17 1
benhid
pymsa

Scoring multiple sequence alignments with Python

713 23 10
rLannes
easyfasta

A lightweight functional Python library for efficient FASTA file parsing and DNA sequence manipulation. No OOP bloat, data only data.

588 1 1
not-a-feature
minifasta

An small FASTA toolbox for small to medium size projects without dependencies.

501 4 2
lignum-vitae
biobase

A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

496 13 5
wwood
kingfisher

Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

481 317 46
mpc-bioinformatics
protgraph

ProtGraph - A Graph-Generator for Proteins

453 13 9
koeng101
dnadesign

A lua package for designing DNA.

439 38 1
jupyterlab
jupyterlab-katex

Renderers and renderer extensions for JupyterLab

363 517 81
jfjlaros
demultiplex

Versatile FASTA/FASTQ demultiplexer.

355 34 9
pgarrett-scripps
fastaframes

Convert between UniProt FASTA files and pandas DataFrames.

342 6 0
incertae-sedis
smof

Explore and analyze biological sequence data

329 19 3