Fasta Python Packages

pyfaidx

Efficient pythonic random access to fasta subsequences

pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

jupyterlab-mathjax3

Renderers and renderer extensions for JupyterLab

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

jupyterlab-geojson

Renderers and renderer extensions for JupyterLab

fuc

Frequently used commands in bioinformatics

jupyterlab-fasta

Renderers and renderer extensions for JupyterLab

storf-reporter

StORF-Reporter - A a tool that takes an annotated genome and returns missing CDS genes (Stop-to-Stop) from unannotated regions.

bioino

💻 Interconverting FASTA, GFF, and CSV.

filterx

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

easyfasta

A lightweight functional Python library for efficient FASTA file parsing and DNA sequence manipulation. No OOP bloat, data only data.

fastaparser

A Python FASTA file Parser and Writer.

biobase

A comprehensive package of biological constants, serving as a foundational resource for biology and bioinformatics, complemented by functions to streamline related tasks.

minifasta

A simple FASTA read and write toolbox for small to medium size projects without dependencies.

jupyterlab-mathjax2

Renderers and renderer extensions for JupyterLab

chromdetect

Detect chromosome-level scaffolds in genome assemblies with inconsistent naming conventions

protgraph

ProtGraph - A Graph-Generator for Proteins

jupyterlab-katex

Renderers and renderer extensions for JupyterLab

fastaframes

Convert between UniProt FASTA files and pandas DataFrames.

smof

Explore and analyze biological sequence data

bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.

dnadesign

Python bindings for dnadesign

jupyterlab-vega3

Renderers and renderer extensions for JupyterLab

perf-ssr

PERF is an exhaustive repeat finder