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Fasta Python Packages

Python packages with the GitHub topic fasta. Sorted by relevance, with stars and monthly downloads.
mdshw5
pyfaidx

Efficient pythonic random access to fasta subsequences

480K 486 76
lmdu
pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

59K 294 24
jupyterlab
jupyterlab-mathjax3

Renderers and renderer extensions for JupyterLab

41K 515 79
pydna-group
pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

21K 225 48
jupyterlab
jupyterlab-geojson

Renderers and renderer extensions for JupyterLab

8K 515 79
sbslee
fuc

Frequently used commands in bioinformatics

7K 58 8
jupyterlab
jupyterlab-fasta

Renderers and renderer extensions for JupyterLab

4K 515 79
NickJD
storf-reporter

StORF-Reporter - A a tool that takes an annotated genome and returns missing CDS genes (Stop-to-Stop) from unannotated regions.

4K 17 2
scbirlab
bioino

💻 Interconverting FASTA, GFF, and CSV.

3K 1 0
dwpeng
filterx

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

2K 23 0
rLannes
easyfasta

A lightweight functional Python library for efficient FASTA file parsing and DNA sequence manipulation. No OOP bloat, data only data.

2K 1 1
Kronopt
fastaparser

A Python FASTA file Parser and Writer.

2K 17 1
lignum-vitae
biobase

A comprehensive package of biological constants, serving as a foundational resource for biology and bioinformatics, complemented by functions to streamline related tasks.

1K 12 5
not-a-feature
minifasta

A simple FASTA read and write toolbox for small to medium size projects without dependencies.

1K 4 2
jupyterlab
jupyterlab-mathjax2

Renderers and renderer extensions for JupyterLab

1K 515 79
shandley
chromdetect

Detect chromosome-level scaffolds in genome assemblies with inconsistent naming conventions

770 0 1
mpc-bioinformatics
protgraph

ProtGraph - A Graph-Generator for Proteins

640 13 8
jupyterlab
jupyterlab-katex

Renderers and renderer extensions for JupyterLab

599 515 79
pgarrett-scripps
fastaframes

Convert between UniProt FASTA files and pandas DataFrames.

589 5 0
incertae-sedis
smof

Explore and analyze biological sequence data

583 17 3
xthua
bacant

This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.

483 21 7
koeng101
dnadesign

Python bindings for dnadesign

481 38 1
jupyterlab
jupyterlab-vega3

Renderers and renderer extensions for JupyterLab

464 515 79
rkmlab
perf-ssr

PERF is an exhaustive repeat finder

405 33 11
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