Fair Python Packages

sssom-pydantic

🐍 An opinionated implementation of a simple subset of SSSOM, based on Pydantic

signposting

Python library for parsing FAIR Signposting links

text2term

a tool for mapping free-text descriptions of entities to ontology terms

biomero

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

fairspec-dataset

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

howfairis

Command line tool to analyze a GitHub or GitLab repository's compliance with the fair-software.eu recommendations

fairspec-metadata

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec-table

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec-library

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec-terminal

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

omnipy

Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)

scipion-em-modelangelo

Scipion plugin for ModelAngelo: an automatic atomic model building program for cryo-EM maps. With or without providing a sequence.

bhklab-project-template

Setup FAIR and DMP compliant projects with one command

epyr-tools

Professional Python toolkit for EPR spectroscopy data analysis. Load Bruker files, apply baseline correction, analyze lineshapes, and convert to FAIR formats. Complete CLI suite with comprehensive testing.

tef-estimator

FAIR cyber risk quantification toolkits, agent-based control simulation (FAIR-CAM), threat event frequency estimator (PyPI), LLM classification validator (PyPI), Monte Carlo risk engine with IRIS benchmarks.

fair-cli

Command line interface for the FAIR Data Pipeline

sum-buddy

Generate and save checksums for all (or certain) contents of given directory.

deep-code

deep-code is a lightweight python tool that aid integration of DeepESDL datasets, experiments with EarthCODE.

somesy

A CLI tool for synchronizing software project metadata

fairspec-extension

Fairspec Extension is a repository template for rapid Fairspec extension development

snapquery

FAIR Management of Query Sets to Mitigate Query Rot in Knowledge Graphs

modos

Python API to manage multi-omics digital objects

django-signposting

A Django middleware that adds FAIR signposting headers to HTTP responses, making your web application more FAIR.