Fair Python Packages

sssom-pydantic

🐍 An elegant implementation of SSSOM, based on Pydantic

biomero

BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

signposting

Python library for parsing FAIR Signposting links

text2term

a tool for mapping free-text descriptions of entities to ontology terms

fair-cli

Command line interface for the FAIR Data Pipeline

howfairis

Command line tool to analyze a GitHub or GitLab repository's compliance with the fair-software.eu recommendations

omnipy

Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)

somesy

A CLI tool for synchronizing software project metadata

fairtool

A CLI tool for FAIR processing of computational materials science data.

epyr-tools

Professional Python toolkit for EPR spectroscopy data analysis. Load Bruker files, apply baseline correction, analyze lineshapes, and convert to FAIR formats. Complete CLI suite with comprehensive testing.

bhklab-project-template

Setup FAIR and DMP compliant projects with one command

websemantic

Language models prepare scientific simulations without guessing: one descriptor per code gives a contract, an ontology with SHACL shapes, a validator and FAIR metadata; the original codes stay pinned and unchanged (TLS, LQL-Equiv, pyrcel).

snapquery

FAIR Management of Query Sets to Mitigate Query Rot in Knowledge Graphs

rs-metadata

An LUMC profile of CodeMeta 3.1 for research software metadata, with a validator that checks codemeta.json against the profile and keeps it consistent with other metadata files in the repository.

deep-code

deep-code is a lightweight python tool that aid integration of DeepESDL datasets, experiments with EarthCODE.

fairspec

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec-terminal

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec-metadata

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec-library

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec-dataset

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

fairspec-table

Fairspec TypeScript is a fast data management framework built on top of the Fairspec standard and Polars DataFrames

django-signposting

A Django middleware that adds FAIR signposting headers to HTTP responses, making your web application more FAIR.

nmrformd

NMRforMD is a python script for the calculation of NMR relaxation time T1 and T2 from molecular dynamics trajectory file.

fairspec-extension

Fairspec Extension is a repository template for rapid Fairspec extension development