Fair Data Python Packages

schemasheets

Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats

nmdc-schema

National Microbiome Data Collaborative (NMDC) unified data model

oxbow

Oxbow makes genomic data ready for high-performance analytics.

arctrl

Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

dtool-lookup-api

This package offers both synchronous and asynchronous implementations of a standardized Python API to communicate with dserver.

coreason-urn-authority

the absolute cryptographic authority over the URN namespace

nanopub

Python client for searching, publishing and modifying nanopublications.

pyelli

An open source ellipsometry analysis tool for reproducible and comprehensible building of optical models.

ifdo

A Python library for creating, validating and manipulating iFDO (image FAIR Digital Object) metadata files

damast

damast: A Python library to facilitate the creation of reproducible data processing pipelines and usage of FAIR data

seedcase-sprout

Grow your research data in a structured, modern way that follows best practices.

marimba

A Python framework for structuring, processing, packaging and distributing FAIR scientific image datasets

fairdatanow

Experimental Python package to support working with data from our Nextcloud server

epyr-tools

Professional Python toolkit for EPR spectroscopy data analysis. Load Bruker files, apply baseline correction, analyze lineshapes, and convert to FAIR formats. Complete CLI suite with comprehensive testing.

gimie

Extract structured metadata from git repositories.

dtool-lookup-gui

Graphical user interface for dtool and dserver written in Python and GTK3.

same-version

Automatically ensures your software version metadata is consistent across key project files.

fair-test

☑️ A library to build and deploy FAIR metrics tests APIs that can be used by FAIR evaluation services supporting the FAIRMetrics specifications, such as FAIR enough and the FAIR evaluator.

django-signposting

A Django middleware that adds FAIR signposting headers to HTTP responses, making your web application more FAIR.

provo

Construct PROV-O compliant provenance graphs.

raw2features

OME-Zarr whole-slide images to patch- and slide-level foundation-model embeddings - cloud-native, FAIR, model- and backend-agnostic.

dtool-lookup-server

Web API to register/lookup/search for dtool dataset metadata

eleutheria

AI-powered scholarly platform for ancient debates on free will, fate & moral responsibility (6th c. BCE–6th c. CE). Vectorless agentic GraphRAG over a FAIR knowledge graph + Greek/Latin critical-edition corpus — citation-verified, multi-LLM. Live at free-will.app

dservercore

Web API to register/lookup/search for dtool dataset metadata