Eqtl Python Packages

pylocuszoom

pyLocusZoom -- publication-ready GWAS visualization in Python: LocusZoom-style regional association plots with LD coloring, gene tracks and recombination overlays, plus Manhattan, QQ, Miami, eQTL, fine-mapping, PheWAS and forest plots. Dog and cat genomes built in.

sushie

Software to perform multi-ancestry SNP fine-mapping on molecular data

cellregmap

CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq

eqtlseq

Hierarchical probabilistic models for multiple gene/variant associations based on NGS data

tejaas

Tejaas - a tool for discovering trans-eQTLs